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1 package JSci.instruments;
2
3 import java.awt.*;
4 import java.awt.event.*;
5 import javax.swing.*;
6 import javax.swing.event.*;
7 import javax.swing.border.*;
8 import java.text.*;
9
10
11
12 public class PTTwoDBarycentre extends ImageFilterAdapter implements ParticleTracker {
13
14
15 public static boolean INTERLACED = true;
16
17 public static int TIME_FIELD = 20;
18
19 private JComboBox crossCombo = new JComboBox();
20 private static long startTime = System.currentTimeMillis();;
21
22
23 public String  getName() { return "PT TwoD Barycentre"; }
24
25 private ParticleTrackerListener ptl = null;
26 public void setListener(ParticleTrackerListener ptl) {
27 this.ptl=ptl;
28 }
29
30 public String toString() {
31 return "Particle Tracking; INTERLACED="+INTERLACED+
32 "; ALPHA="+PTTwoDBarycentreCross.ALPHA+
33 "; WEIGHT_LIGHT_PART="+PTTwoDBarycentreCross.WEIGHT_LIGHT_PART+
34 "; REGION_SPEED="+PTTwoDBarycentreCross.REGION_SPEED+
35 "; ODD_EVEN="+PTTwoDBarycentreCross.ODD_EVEN+
36 "; startTime="+startTime;
37 }
38
39
40 public void filter(Image f) {
41 ListModel l = crossCombo.getModel();
42 if (l.getSize()==0) return;
43 int[] n=new int[l.getSize()];
44 double[] x=new double[l.getSize()];
45 double[] y=new double[l.getSize()];
46 for (int j=0;j<l.getSize();j++) {
47 PTTwoDBarycentreCross cross = (PTTwoDBarycentreCross)l.getElementAt(j);
48 if (INTERLACED) cross.findInterlaced(f);
49 else cross.find(f);
50 n[j]=cross.getN();
51 x[j]=cross.getX();
52 y[j]=cross.getY();
53 }
54 if (ptl!=null) ptl.receivePosition(f.getTimeStamp()-startTime,n,x,y,null);
55 if (!INTERLACED) return;
56 for (int j=0;j<l.getSize();j++) {
57 PTTwoDBarycentreCross cross = (PTTwoDBarycentreCross)l.getElementAt(j);
58 x[j]=cross.getX2();
59 y[j]=cross.getY2();
60 }
61 if (ptl!=null) ptl.receivePosition(f.getTimeStamp()+TIME_FIELD-startTime,n,x,y,null);
62 }
63
64 JComponent comp;
65
66 public Component getFilterControlComponent() {
67 if (comp!=null) return comp;
68 JPanel comp = new JPanel();
69 comp.setLayout(new BorderLayout());
70 JButton addButton = new JButton("Add");
72 comp.add(BorderLayout.NORTH,addButton);
73 addButton.addActionListener(new ActionListener() {
74 public void actionPerformed(ActionEvent e) {
75 if (theROI==null) return;
76 PTTwoDBarycentreCross cross = new PTTwoDBarycentreCross((Rectangle)theROI.getShape());
77 crossCombo.addItem(cross);
78 }
79 });
80 JButton removeButton = new JButton("Remove");
82 comp.add(BorderLayout.SOUTH,removeButton);
83 removeButton.addActionListener(new ActionListener() {
84 public void actionPerformed(ActionEvent e) {
85 crossCombo.removeItem(crossCombo.getSelectedItem());
86 }
87 });
88 crossCombo.setEditable(false);
90 comp.add(BorderLayout.EAST,crossCombo);
91 return comp;
93 }
94
95 private ROI theROI = null;
96
97 public void setROI(ROI r) {
98 theROI = r;
99 }
100
101 public static void main(String [] args) {
102 ROI r = new RectangularROI(10,10,30,30);
103 PTTwoDBarycentre f = new PTTwoDBarycentre();
104 Player p = new Player();
105 ImageSource fs = new SimulatedBarycentreSource();
106 fs.setSink(f);
107 f.setSink(p);
108 p.addROI(r);
109 f.setROI(r);
110 p.start();
111
112 final NumberFormat formatter = NumberFormat.getNumberInstance();
113 { formatter.setMaximumFractionDigits(3);
114 formatter.setMinimumFractionDigits(1);
115 formatter.setMinimumIntegerDigits(1);
116 formatter.setMaximumIntegerDigits(4);
117 }
118
119 ParticleTrackerListener ptl=new ParticleTrackerListener() {
120 public void receivePosition(long time,int[] n,double[] x,double[] y,double[] z) {
121 System.out.print(time);
122 for (int j=0;j<n.length;j++)
123 System.out.print(" "+n[j]+" "+formatter.format(x[j])+" "+formatter.format(y[j]));
124 System.out.println();
125 }
126 };
127
128 f.setListener(ptl);
129
130 }
131
132
133
134
135
136
137
138
139
140
141
142
145 static class SimulatedBarycentreSource implements ImageSource,Runnable {
146
147 Dimension dim = new Dimension(130,97);
148
149 public SimulatedBarycentreSource() {
150 Thread t = new Thread (this);
151 t.setDaemon(true);
152 t.start();
153 }
154
155 private ImageSink sink;
156
159 public void setSink(ImageSink fs) {
160 if (sink!=fs) {
161 sink=fs;
162 sink.setSource(this);
163 }
164 }
165
166
167 private static final double SIGMA = 4.0;
168 private static final double DELTAX = 4.0;
169 private static final double DELTAY = 2.0;
170 private double f(double x,double y) {
171 return
172 Math.exp(-(x*x+y*y)/(2.0*SIGMA*SIGMA))-
173 Math.exp(-((x-DELTAX)*(x-DELTAX)+(y-DELTAY)*(y-DELTAY))/(2.0*SIGMA*SIGMA));
174 }
175
176 public void run() {
177 int num = 0;
178 while (true) {
179 final int n = num++;
180 final long t = System.currentTimeMillis();
181 final double x0 = Math.random()*4+40.0;
182 final double y0 = Math.random()*4+50.0;
183 final byte[] im = new byte[getWidth()*getHeight()];
184 final Dimension dim = new Dimension(getWidth(),getHeight());
185 Image f = new Image() {
186 public byte[] getData() { return im; }
187 public Dimension getSize() { return dim; }
188 public long getTimeStamp() { return t; }
189 };
190
191 for (int j=0;j<f.getWidth();j++)
192 for (int k=0;k<f.getHeight();k++)
193 f.getData()[j+k*f.getWidth()] = (byte) (128.0+128.0*SimulatedBarycentreSource.this.f(j-x0,k-y0));
194
195 if (sink!=null) sink.receive(f);
196 try { Thread.sleep(100); }
197 catch (InterruptedException e) {}
198 }
199 }
200
201
202 public int getWidth() { return dim.width; }
203
204
205 public int getHeight() { return dim.height; }
206
207
208 public Dimension getSize() { return dim; }
209
210
212 public Component getControlComponent() {
213 JPanel p = new JPanel();
214 p.add(new JLabel("Test"));
215 Border etched = BorderFactory.createEtchedBorder();
216 Border titled = BorderFactory.createTitledBorder(etched,"source");
217 p.setBorder(titled);
218 return p;
219 }
220
221 }
222 }
223
224
225
226 |
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